PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7643_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 182aa    MW: 20364.1 Da    PI: 9.0733
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7643_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001792108117
                                         EEETTTTEEESSHHHHH CS
                             zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                                         ++Cp C k+F+r  n++
  cra_locus_7643_iso_1_len_769_ver_3  92 FSCPLCFKTFNRYNNMQ 108
                                         89*********988875 PP

2zf-C2H215.74.2e-05123145123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                         + C +Cgk F  + + ++H +++
  cra_locus_7643_iso_1_len_769_ver_3 123 FMCRKCGKAFAVRGDWRTHEKNC 145
                                         89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-792143No hitNo description
Gene3DG3DSA:3.30.160.603.9E-6119143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MMIINKNRPF AAAKEGGEAE SVTVALHIGL PNPSAADLAA SSSSTTSTNK DEEEDQEEEV  60
EEGINTGYNM RVKKGQYWIP TPSQILIGPT QFSCPLCFKT FNRYNNMQNP SNTFKRKHGI  120
KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GHGHGPYATT  180
TT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792207.17e-75PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ9SVY12e-65ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A068UP395e-73A0A068UP39_COFCA; Uncharacterized protein
STRINGVIT_08s0007g08070.t012e-69(Vitis vinifera)